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Research Article

Distinctive Expansion of Potential Virulence Genes in the Genome of the Oomycete Fish Pathogen Saprolegnia parasitica

  • Rays H. Y. Jiang equal contributor,

    equal contributor Contributed equally to this work with: Rays H. Y. Jiang, Irene de Bruijn, Brian J. Haas

    Affiliation: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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  • Irene de Bruijn equal contributor,

    equal contributor Contributed equally to this work with: Rays H. Y. Jiang, Irene de Bruijn, Brian J. Haas

    Affiliation: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom

    Current address: Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands.

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  • Brian J. Haas equal contributor,

    equal contributor Contributed equally to this work with: Rays H. Y. Jiang, Irene de Bruijn, Brian J. Haas

    Affiliation: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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  • Rodrigo Belmonte,

    Affiliations: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom, Scottish Fish Immunology Research Centre, School of Biological Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • Lars Löbach,

    Affiliation: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • James Christie,

    Affiliations: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom, Scottish Fish Immunology Research Centre, School of Biological Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • Guido van den Ackerveken,

    Affiliation: Plant-Microbe Interactions, Department of Biology, Utrecht University, Utrecht, The Netherlands

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  • Arnaud Bottin,

    Affiliation: Université de Toulouse; UPS; Laboratoire de Recherche en Sciences Végétales, Castanet-Tolosan, France and CNRS, Laboratoire de Recherche en Sciences Végétales, Auzeville, Castanet-Tolosan, France

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  • Vincent Bulone,

    Affiliation: Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, Stockholm, Sweden

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  • Sara M. Díaz-Moreno,

    Affiliation: Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, Stockholm, Sweden

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  • Bernard Dumas,

    Affiliation: Université de Toulouse; UPS; Laboratoire de Recherche en Sciences Végétales, Castanet-Tolosan, France and CNRS, Laboratoire de Recherche en Sciences Végétales, Auzeville, Castanet-Tolosan, France

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  • Lin Fan,

    Affiliation: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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  • Elodie Gaulin,

    Affiliation: Université de Toulouse; UPS; Laboratoire de Recherche en Sciences Végétales, Castanet-Tolosan, France and CNRS, Laboratoire de Recherche en Sciences Végétales, Auzeville, Castanet-Tolosan, France

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  • Francine Govers,

    Affiliations: Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands, Centre for BioSystems Genomics, Wageningen, The Netherlands

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  • Laura J. Grenville-Briggs,

    Affiliations: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom, Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, Stockholm, Sweden

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  • Neil R. Horner,

    Affiliation: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • Joshua Z. Levin,

    Affiliation: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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  • Marco Mammella,

    Affiliation: Dipartimento di Gestione dei Sistemi Agrari e Forestali, Università degli Studi Mediterranea, Reggio Calabria, Italy

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  • Harold J. G. Meijer,

    Affiliation: Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands

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  • Paul Morris,

    Affiliation: Department of Biological Sciences, Bowling Green State University, Bowling Green, Ohio, United States of America

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  • Chad Nusbaum,

    Affiliation: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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  • Stan Oome,

    Affiliation: Plant-Microbe Interactions, Department of Biology, Utrecht University, Utrecht, The Netherlands

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  • Andrew J. Phillips,

    Affiliation: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • David van Rooyen,

    Affiliation: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • Elzbieta Rzeszutek,

    Affiliation: Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, Stockholm, Sweden

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  • Marcia Saraiva,

    Affiliation: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • Chris J. Secombes,

    Affiliation: Scottish Fish Immunology Research Centre, School of Biological Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • Michael F. Seidl,

    Affiliations: Centre for BioSystems Genomics, Wageningen, The Netherlands, Theoretical Biology and Bioinformatics, Department of Biology, Utrecht University, Utrecht, The Netherlands

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  • Berend Snel,

    Affiliations: Centre for BioSystems Genomics, Wageningen, The Netherlands, Theoretical Biology and Bioinformatics, Department of Biology, Utrecht University, Utrecht, The Netherlands

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  • Joost H. M. Stassen,

    Affiliation: Plant-Microbe Interactions, Department of Biology, Utrecht University, Utrecht, The Netherlands

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  • Sean Sykes,

    Affiliation: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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  • Sucheta Tripathy,

    Affiliation: Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, United States of America

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  • Herbert van den Berg,

    Affiliation: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • Julio C. Vega-Arreguin,

    Affiliation: ENES Unidad León, Universidad Nacional Autónoma de México, León, Mexico

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  • Stephan Wawra,

    Affiliation: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom

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  • Sarah K. Young,

    Affiliation: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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  • Qiandong Zeng,

    Affiliation: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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  • Javier Dieguez-Uribeondo,

    Affiliation: Departamento de Micología, Real Jardín Botánico CSIC, Madrid, Spain

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  • Carsten Russ ,

    Affiliation: Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

    * These authors also contributed equally to this work.

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  • Brett M. Tyler ,

    Affiliation: Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, United States of America

    Current address: Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.

    * These authors also contributed equally to this work.

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  • Pieter van West mail

    p.vanwest@abdn.ac.uk

    Affiliation: Aberdeen Oomycete Laboratory, School of Medical Sciences, University of Aberdeen, Aberdeen, United Kingdom

    * These authors also contributed equally to this work.

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  • Published: June 13, 2013
  • DOI: 10.1371/journal.pgen.1003272

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