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Research Article

The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion

  • Jeffrey J. Coleman equal contributor,

    equal contributor Contributed equally to this work with: Jeffrey J. Coleman, Steve D. Rounsley, Marianela Rodriguez-Carres

    Affiliations: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America, Massachusetts General Hospital, Boston, Massachusetts, United States of America

    X
  • Steve D. Rounsley equal contributor,

    equal contributor Contributed equally to this work with: Jeffrey J. Coleman, Steve D. Rounsley, Marianela Rodriguez-Carres

    Affiliation: BIO5 Institute and Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America

    X
  • Marianela Rodriguez-Carres equal contributor,

    equal contributor Contributed equally to this work with: Jeffrey J. Coleman, Steve D. Rounsley, Marianela Rodriguez-Carres

    Affiliations: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America, Department of Biology, Duke University, Durham, North Carolina, United States of America

    X
  • Alan Kuo,

    Affiliation: United States Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America

    X
  • Catherine C. Wasmann,

    Affiliation: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America

    X
  • Jane Grimwood,

    Affiliations: Joint Genome Institute—Stanford Human Genome Center, Palo Alto, California, United States of America, Hudson Alpha Genome Sequencing Center, Hudson Alpha Institute for Biotechnology, Huntsville, Alabama, United States of America

    X
  • Jeremy Schmutz,

    Affiliations: Joint Genome Institute—Stanford Human Genome Center, Palo Alto, California, United States of America, Hudson Alpha Genome Sequencing Center, Hudson Alpha Institute for Biotechnology, Huntsville, Alabama, United States of America

    X
  • Masatoki Taga,

    Affiliation: Department of Biology, Okayama University, Okayama, Japan

    X
  • Gerard J. White,

    Affiliation: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America

    X
  • Shiguo Zhou,

    Affiliation: Laboratory for Molecule and Computational Genomics, University of Wisconsin, Madison, Wisconsin, United States of America

    X
  • David C. Schwartz,

    Affiliation: Laboratory for Molecule and Computational Genomics, University of Wisconsin, Madison, Wisconsin, United States of America

    X
  • Michael Freitag,

    Affiliation: Department of Biochemistry and Biophysics and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America

    X
  • Li-jun Ma,

    Affiliation: The Broad Institute, Cambridge, Massachusetts, United States of America

    X
  • Etienne G. J. Danchin,

    Affiliations: Architecture et Fonction des Macromolécules Biologiques, CNRS, Universités Aix-Marseille I & II, Marseille, France, Institut National de la Recherche Agronomique, Centre de recherche de Sophia-Antipolis, Sophia-Antipolis, France

    X
  • Bernard Henrissat,

    Affiliation: Architecture et Fonction des Macromolécules Biologiques, CNRS, Universités Aix-Marseille I & II, Marseille, France

    X
  • Pedro M. Coutinho,

    Affiliation: Architecture et Fonction des Macromolécules Biologiques, CNRS, Universités Aix-Marseille I & II, Marseille, France

    X
  • David R. Nelson,

    Affiliation: Department of Molecular Sciences, University of Tennessee, Memphis, Tennessee, United States of America

    X
  • Dave Straney,

    Affiliation: Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland, United States of America

    X
  • Carolyn A. Napoli,

    Affiliation: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America

    X
  • Bridget M. Barker,

    Affiliation: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America

    X
  • Michael Gribskov,

    Affiliation: Department of Biological Sciences, Purdue University, West Lafayette, Indiana, United States of America

    X
  • Martijn Rep,

    Affiliation: Plant Pathology, University of Amsterdam, Amsterdam, The Netherlands

    X
  • Scott Kroken,

    Affiliation: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America

    X
  • István Molnár,

    Affiliation: South West Center for Natural Products Research and Commercialization, Office of Arid Lands Studies, University of Arizona, Tucson, Arizona, United States of America

    X
  • Christopher Rensing,

    Affiliation: Department of Soil, Water, and Environmental Science, University of Arizona, Tucson, Arizona, United States of America

    X
  • John C. Kennell,

    Affiliation: Department of Biology, Saint Louis University, St. Louis, Missouri, United States of America

    X
  • Jorge Zamora,

    Affiliation: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America

    X
  • Mark L. Farman,

    Affiliation: Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America

    X
  • Eric U. Selker,

    Affiliation: Institute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America

    X
  • Asaf Salamov,

    Affiliation: United States Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America

    X
  • Harris Shapiro,

    Affiliation: United States Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America

    X
  • Jasmyn Pangilinan,

    Affiliation: United States Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America

    X
  • Erika Lindquist,

    Affiliation: United States Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America

    X
  • Casey Lamers,

    Affiliation: Laboratory for Molecule and Computational Genomics, University of Wisconsin, Madison, Wisconsin, United States of America

    X
  • Igor V. Grigoriev,

    Affiliation: United States Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America

    X
  • David M. Geiser,

    Affiliation: Fusarium Research Center, Department of Plant Pathology, The Pennsylvania State University, University Park, Pennsylvania, United States of America

    X
  • Sarah F. Covert,

    Affiliation: Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia, United States of America

    X
  • Esteban Temporini,

    Affiliations: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America, Vilmorin Inc., Tucson, Arizona, United States of America

    X
  • Hans D. VanEtten mail

    vanetten@ag.arizona.edu

    Affiliation: Department of Plant Sciences, University of Arizona, Tucson, Arizona, United States of America

    X
  • Published: August 28, 2009
  • DOI: 10.1371/journal.pgen.1000618

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