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Table of Contents: September 2007

COVER

Rolled thumb print

Image Credit: The print was collected using an electronic rolled fingerprint scanner (ACCO1394, Smiths Heimann Biometrics). Colors were modified using image J (http://rsb.info.nih.gov/ij/). The figure was collected and edited by Sarah E. Medland.
Issue Image

This rolled thumb print shows a double loop whorl pattern yielding both ulnar and radial ridge counts (see Medland et al., e165).

Review

Research Articles

Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice

Ana L Caicedo, Scott H Williamson, Ryan D Hernandez, Adam Boyko, Adi Fledel-Alon, Thomas L York, Nicholas R Polato, Kenneth M Olsen, Rasmus Nielsen, Susan R McCouch, Carlos D Bustamante, Michael D Purugganan

Gene Expression Programs of Human Smooth Muscle Cells: Tissue-Specific Differentiation and Prognostic Significance in Breast Cancers

Jen-Tsan Chi, Edwin H Rodriguez, Zhen Wang, Dimitry S. A Nuyten, Sayan Mukherjee, Matt van de Rijn, Marc J. van de Vijver, Trevor Hastie, Patrick O Brown

Linkage Analysis of a Model Quantitative Trait in Humans: Finger Ridge Count Shows Significant Multivariate Linkage to 5q14.1

Sarah E Medland, Danuta Z Loesch, Bogdan Mdzewski, Gu Zhu, Grant W Montgomery, Nicholas G Martin

CpG Island Methylation in a Mouse Model of Lymphoma Is Driven by the Genetic Configuration of Tumor Cells

Rene Opavsky, Shu-Huei Wang, Prashant Trikha, Aparna Raval, Yuan Huang, Yue-Zhong Wu, Benjamin Rodriguez, Benjamin Keller, Sandya Liyanarachchi, Guo Wei, Ramana V Davuluri, Michael Weinstein, Dean Felsher, Michael Ostrowski, Gustavo Leone, Christoph Plass

Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells

Yann Marcy, Thomas Ishoey, Roger S Lasken, Timothy B Stockwell, Brian P Walenz, Aaron L Halpern, Karen Y Beeson, Susanne M. D Goldberg, Stephen R Quake

Comparing the DNA Hypermethylome with Gene Mutations in Human Colorectal Cancer

Kornel E Schuebel, Wei Chen, Leslie Cope, Sabine C Glöckner, Hiromu Suzuki, Joo-Mi Yi, Timothy A Chan, Leander Van Neste, Wim Van Criekinge, Sandra van den Bosch, Manon van Engeland, Angela H Ting, Kamwing Jair, Wayne Yu, Minoru Toyota, Kohzoh Imai, Nita Ahuja, James G Herman, Stephen B Baylin

In Vivo Validation of a Computationally Predicted Conserved Ath5 Target Gene Set

Filippo Del Bene, Laurence Ettwiller, Dorota Skowronska-Krawczyk, Herwig Baier, Jean-Marc Matter, Ewan Birney, Joachim Wittbrodt

PCA-Correlated SNPs for Structure Identification in Worldwide Human Populations

Peristera Paschou, Elad Ziv, Esteban G Burchard, Shweta Choudhry, William Rodriguez-Cintron, Michael W Mahoney, Petros Drineas

Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling

David Halpern, Hélène Chiapello, Sophie Schbath, Stéphane Robin, Christelle Hennequet-Antier, Alexandra Gruss, Meriem El Karoui

A Comprehensive Genetic Characterization of Bacterial Motility

Hany S Girgis, Yirchung Liu, William S Ryu, Saeed Tavazoie

Food Deprivation Attenuates Seizures through CaMKII and EAG K+ Channels

Brigitte LeBoeuf, Todd R Gruninger, L. Rene Garcia

Telomeric Trans-Silencing: An Epigenetic Repression Combining RNA Silencing and Heterochromatin Formation

Thibaut Josse, Laure Teysset, Anne-Laure Todeschini, Clara M Sidor, Dominique Anxolabéhère, Stéphane Ronsseray

Linking Metabolic QTLs with Network and cis-eQTLs Controlling Biosynthetic Pathways

Adam M Wentzell, Heather C Rowe, Bjarne Gram Hansen, Carla Ticconi, Barbara Ann Halkier, Daniel J Kliebenstein

The Inheritance of Resistance Alleles in Multiple Sclerosis

Sreeram V Ramagopalan, Andrew P Morris, David A Dyment, Blanca M Herrera, Gabriele C DeLuca, Matthew R Lincoln, Sarah M Orton, Michael J Chao, A. Dessa Sadovnick, George C Ebers

Evidence for Transgenerational Transmission of Epigenetic Tumor Susceptibility in Drosophila

Yalan Xing, Song Shi, Long Le, Crystal A Lee, Louise Silver-Morse, Willis X Li

Irf3 Polymorphism Alters Induction of Interferon Beta in Response to Listeria monocytogenes Infection

Oleg Garifulin, Zanmei Qi, Haihong Shen, Sujatha Patnala, Michael R Green, Victor Boyartchuk

Corrections

Correction: The Genographic Project Public Participation Mitochondrial DNA Database

Doron M. Behar, Saharon Rosset, Jason Blue-Smith, Oleg Balanovsky, Shay Tzur, David Comas, R. John Mitchell, Lluis Quintana-Murci, Chris Tyler-Smith, R. Spencer Wells , The Genographic Consortium