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Research Article

Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing

  • Stéphane Delmas equal contributor,

    equal contributor Contributed equally to this work with: Stéphane Delmas, Steven T. Pullan

    Affiliation: School of Biology, University of Nottingham, Nottingham, United Kingdom

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  • Steven T. Pullan equal contributor,

    equal contributor Contributed equally to this work with: Stéphane Delmas, Steven T. Pullan

    Affiliation: School of Biology, University of Nottingham, Nottingham, United Kingdom

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  • Sanyasi Gaddipati,

    Affiliation: School of Biosciences, Sutton Bonington Campus, University of Nottingham, Loughborough, United Kingdom

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  • Matthew Kokolski,

    Affiliation: School of Biology, University of Nottingham, Nottingham, United Kingdom

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  • Sunir Malla,

    Affiliation: Deep Seq, Faculty of Medicine and Health Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, United Kingdom

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  • Martin J. Blythe,

    Affiliation: Deep Seq, Faculty of Medicine and Health Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, United Kingdom

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  • Roger Ibbett,

    Affiliation: School of Biosciences, Sutton Bonington Campus, University of Nottingham, Loughborough, United Kingdom

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  • Maria Campbell,

    Affiliation: School of Biology, University of Nottingham, Nottingham, United Kingdom

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  • Susan Liddell,

    Affiliation: Division of Animal Sciences, Sutton Bonington Campus, University of Nottingham, Loughborough, United Kingdom

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  • Aziz Aboobaker,

    Affiliation: Deep Seq, Faculty of Medicine and Health Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, United Kingdom

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  • Gregory A. Tucker,

    Affiliation: School of Biosciences, Sutton Bonington Campus, University of Nottingham, Loughborough, United Kingdom

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  • David B. Archer mail

    david.archer@nottingham.ac.uk

    Affiliation: School of Biology, University of Nottingham, Nottingham, United Kingdom

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  • Published: August 09, 2012
  • DOI: 10.1371/journal.pgen.1002875

About the Authors

Stéphane Delmas, Steven T. Pullan, Matthew Kokolski, Maria Campbell, David B. Archer
School of Biology, University of Nottingham, Nottingham, United Kingdom
Sanyasi Gaddipati, Roger Ibbett, Gregory A. Tucker
School of Biosciences, Sutton Bonington Campus, University of Nottingham, Loughborough, United Kingdom
Sunir Malla, Martin J. Blythe, Aziz Aboobaker
Deep Seq, Faculty of Medicine and Health Sciences, Queen's Medical Centre, University of Nottingham, Nottingham, United Kingdom
Susan Liddell
Division of Animal Sciences, Sutton Bonington Campus, University of Nottingham, Loughborough, United Kingdom

Corresponding Author

Email: david.archer@nottingham.ac.uk

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: SD STP DBA. Performed the experiments: SD STP SG MK SM RI MC SL. Analyzed the data: SD STP SG MK MJB RI SL AA GAT DBA. Contributed reagents/materials/analysis tools: SG RI SL AA GAT. Wrote the paper: SD STP MK DBA.