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Research Article

A Functional Phylogenomic View of the Seed Plants

  • Ernest K. Lee equal contributor,

    equal contributor Contributed equally to this work with: Ernest K. Lee, Angelica Cibrian-Jaramillo, Sergios-Orestis Kolokotronis

    Affiliation: Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America

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  • Angelica Cibrian-Jaramillo equal contributor,

    equal contributor Contributed equally to this work with: Ernest K. Lee, Angelica Cibrian-Jaramillo, Sergios-Orestis Kolokotronis

    Affiliations: Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America, Cullman Program in Molecular Systematics, The New York Botanical Garden, Bronx, New York, United States of America, Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, United States of America

    Current address: National Laboratory of Genomics for Biodiversity (LANGEBIO), Irapuato, Guanajuato, Mexico

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  • Sergios-Orestis Kolokotronis equal contributor,

    equal contributor Contributed equally to this work with: Ernest K. Lee, Angelica Cibrian-Jaramillo, Sergios-Orestis Kolokotronis

    Affiliation: Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America

    Current address: Department of Biological Sciences, Barnard College, Columbia University, New York, New York, United States of America

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  • Manpreet S. Katari,

    Affiliation: Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, United States of America

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  • Alexandros Stamatakis,

    Affiliation: Department of Computer Science, Technische Universität München, Munich, Germany

    Current address: Heidelberg Institute for Theoretical Studies, Heidelberg, Germany

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  • Michael Ott,

    Affiliation: Department of Computer Science, Technische Universität München, Munich, Germany

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  • Joanna C. Chiu,

    Affiliation: Department of Entomology, University of California Davis, Davis, California, United States of America

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  • Damon P. Little,

    Affiliation: Cullman Program in Molecular Systematics, The New York Botanical Garden, Bronx, New York, United States of America

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  • Dennis Wm. Stevenson,

    Affiliation: Cullman Program in Molecular Systematics, The New York Botanical Garden, Bronx, New York, United States of America

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  • W. Richard McCombie,

    Affiliation: Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America

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  • Robert A. Martienssen mail,

    martiens@cshl.edu (RAM); desalle@amnh.org (RD)

    Affiliation: Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America

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  • Gloria Coruzzi,

    Affiliation: Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, United States of America

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  • Rob DeSalle mail

    martiens@cshl.edu (RAM); desalle@amnh.org (RD)

    Affiliation: Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America

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  • Published: December 15, 2011
  • DOI: 10.1371/journal.pgen.1002411

About the Authors

Ernest K. Lee, Angelica Cibrian-Jaramillo, Sergios-Orestis Kolokotronis, Rob DeSalle
Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America
Angelica Cibrian-Jaramillo, Damon P. Little, Dennis Wm. Stevenson
Cullman Program in Molecular Systematics, The New York Botanical Garden, Bronx, New York, United States of America
Angelica Cibrian-Jaramillo, Manpreet S. Katari, Gloria Coruzzi
Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, United States of America
Alexandros Stamatakis, Michael Ott
Department of Computer Science, Technische Universität München, Munich, Germany
Joanna C. Chiu
Department of Entomology, University of California Davis, Davis, California, United States of America
W. Richard McCombie, Robert A. Martienssen
Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America

Corresponding Authors

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: EKL DWS WRM RAM GC RD. Performed the experiments: EKL AC-J S-OK MSK. Analyzed the data: EKL AC-J S-OK MSK AS MO DPL. Contributed reagents/materials/analysis tools: RD EKL MSK AS JCC WRM RAM GC. Wrote the paper: EKL AC-J S-OK MSK DWS RAM RD.