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Research Article

Inference of Splicing Regulatory Activities by Sequence Neighborhood Analysis

  • Michael B Stadler mail,

    To whom correspondence should be addressed. E-mail: michael.stadler@fmi.ch (MBS); cburge@mit.edu (CBB)

    Affiliation: Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

    ¤ Current address: Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland

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  • Noam Shomron,

    Affiliation: Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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  • Gene W Yeo,

    Affiliation: Crick-Jacobs Center for Computational and Theoretical Biology and Laboratory of Genetics, The Salk Institute, La Jolla, California, United States of America

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  • Aniket Schneider,

    Affiliation: Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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  • Xinshu Xiao,

    Affiliation: Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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  • Christopher B Burge mail

    To whom correspondence should be addressed. E-mail: michael.stadler@fmi.ch (MBS); cburge@mit.edu (CBB)

    Affiliation: Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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  • Published: November 24, 2006
  • DOI: 10.1371/journal.pgen.0020191

About the Authors

Michael B Stadler, Noam Shomron, Aniket Schneider, Xinshu Xiao, Christopher B Burge
Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
Gene W Yeo
Crick-Jacobs Center for Computational and Theoretical Biology and Laboratory of Genetics, The Salk Institute, La Jolla, California, United States of America

Corresponding Authors

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

MBS, NS, GWY, and CBB conceived and designed the experiments. MBS, NS, and AS performed the experiments. MBS analyzed the data. MBS and XX contributed reagents/materials/analysis tools. MBS and CBB wrote the paper.