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Research Article

A Novel Human-Infection-Derived Bacterium Provides Insights into the Evolutionary Origins of Mutualistic Insect–Bacterial Symbioses

  • Adam L. Clayton mail,

    aclayto@gmail.com

    Affiliation: Department of Biology, University of Utah, Salt Lake City, Utah, United States of America

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  • Kelly F. Oakeson,

    Affiliation: Department of Biology, University of Utah, Salt Lake City, Utah, United States of America

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  • Maria Gutin,

    Affiliation: Department of Biology, University of Utah, Salt Lake City, Utah, United States of America

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  • Arthur Pontes,

    Affiliation: Department of Biology, University of Utah, Salt Lake City, Utah, United States of America

    X
  • Diane M. Dunn,

    Affiliation: Department of Human Genetics, University of Utah, Salt Lake City, Utah, United States of America

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  • Andrew C. von Niederhausern,

    Affiliation: Department of Human Genetics, University of Utah, Salt Lake City, Utah, United States of America

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  • Robert B. Weiss,

    Affiliation: Department of Human Genetics, University of Utah, Salt Lake City, Utah, United States of America

    X
  • Mark Fisher,

    Affiliations: ARUP Institute for Clinical and Experimental Pathology, University of Utah, Salt Lake City, Utah, United States of America, Department of Pathology, University of Utah, Salt Lake City, Utah, United States of America

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  • Colin Dale

    Affiliation: Department of Biology, University of Utah, Salt Lake City, Utah, United States of America

    X
  • Published: November 15, 2012
  • DOI: 10.1371/journal.pgen.1002990

Reader Comments (1)

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How to get the data?

Posted by jeisen on 30 Nov 2012 at 14:45 GMT

I am unable to find accession numbers for the full genome data reported in this paper (e.g., raw shotgun data, sequence assemblies). Is the data available? If so, where? If not, why not?

No competing interests declared.

RE: How to get the data?

aclayto replied to jeisen on 03 Dec 2012 at 15:51 GMT

We are currently in the process of closing the strain HS genome sequence. In order to make the data used in this manuscript accessible, we are uploading the current draft assembly to Genbank as a whole genome shotgun submission and will provide an accession number for this data ASAP.

No competing interests declared.

RE: How to get the data?

aclayto replied to jeisen on 12 Dec 2012 at 15:09 GMT

In the spirit of open access, both the strain HS draft assembly and SOPE complete assembly are now hosted at the following address:

<http://www.genome.utah.ed...>

Please note the request regarding the SOPE annotation.

No competing interests declared.

RE: RE: How to get the data?

aclayto replied to aclayto on 12 Dec 2012 at 18:07 GMT

Alternative means of obtaining the genome sequences:
Strain HS:
<http://figshare.com/artic...>

SOPE:
<http://figshare.com/artic...>

No competing interests declared.